Universidad Complutense de Madrid - Inmunology Departament

Paste Sequence (In Fasta format)
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Search Epitopes
Epitope Criteria
Peptide length:
Output options

Only neutralizing

Map in sequence

Min. Identity ≥

Hits since November/2021

HELP: Epitope Criteria

Here the user can select the parameters that the alignment must meet to consider a sequence fragment (target sequence) as a B-cell epitope.

Given the default parameters, here we present an example of an alignment that would result in the prediction of a linear B-cell epitope. Likewise, we show some alignments that would be descated and not considerated as positive hits:

HELP: Output options

If the option "Only neutralizing" is selected, BepiBlast, will only return B cell epitopes resulting from hits to neutralizing epitopes. If the option "Map in sequence" is selected, BepiBlast colors the sequence residues into an RGB scale, which enable mapping B cell epitopes in the query seqeunce.



Alvaro Ras Carmona, PhD Student

Dr. Pedro A Reche, Group Leader

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